Gseascores
WebOct 31, 2024 · Description This is a generic function. When implemented as the S4 method for objects of class GSCA, this function plots a figure of the positions of the gene sets in the ranked gene list and the location of the enrichment score. To use this function for objects of class GSCA : viewGSEA (object, gscName, gsName) Usage 1 viewGSEA (object, ...) WebGirls High School. December 2024. Indoor Soccer. Monday, April 3 2024 Open Co-Ed. April 2024. Register. Indoor Soccer. Sunday Women's Open February 5*. February 2024.
Gseascores
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WebThis function takes in the output of gseaScores and the named vector of phenotypes, and plots the positions of genes of the gene set in the ranked phenotype vector and the location of the enrichment score. WebHTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
WebOct 31, 2024 · a single integer or numeric value used in weighting phenotypes in GSEA (see "gseaScores" function) keggGSCs: a character vector of names of all KEGG gene set collections. This will help create web links for KEGG terms. goGSCs: a character vector of names of all GO gene set collections. This will help create web links for GO terms. … WebDeveloped package to plot figures using R. Contribute to WubingZhang/ggView development by creating an account on GitHub.
WebAug 29, 2024 · df <- gseaScores (geneList, geneSet, exponent, fortify=TRUE) df$ymin <- 0 df$ymax <- 0 pos <- df$position == 1 h <- diff (range (df$runningScore))/20 df$ymin [pos] <- -h df$ymax [pos] <- h df$geneList <- geneList if (length (object@gene2Symbol) == 0) { df$gene <- names (geneList) } else { df$gene <- object@gene2Symbol [names (geneList)] } WebHHMI’s Janelia Research Campus in Ashburn, Virginia, cracks open scientific fields by breaking through technical and intellectual barriers. Our integrated teams of lab scientists and tool-builders pursue a small number of scientific questions with potential for transformative impact. To drive science forward, we share our methods, results, and …
gseaScores: Compute enrichment scores for GSEA (Gene Set Enrichment Analysis) Description 'gseaScores' computes the enrichment score, running sum scores and positions of hits for GSEA on one gene set. 'gseaScoresBatch' computes enrichment scores for both input 'geneList' and its permutations for GSEA on one gene set.
WebgseaScores: Compute enrichment scores for GSEA (Gene Set Enrichment... htmlAttrVectorPaste: Collapse an attribute vector for a table unit; HTSanalyzeR: HTSanalyzeR Package Overview; HTSanalyzeR4cellHTS2: An analysis pipeline for cellHTS2 objects; hyperGeoTest: Performs hypergeometric tests for over-representation... how to use the formula c1v1 c2v2WebNov 10, 2024 · The cumulative sum of these scores along the ordered gene list becomes the GSEA path which is plotted below, and the maximun score obtained along this path is the GSEA score. how to use the format painterWebR/gseAnalyzer.R defines the following functions: gseDGN gseNCG gseDO gseDisease orgonit wikipediaWebGene sets. Archived gene sets from the GSEA PNAS 2005 publication. Note: This collection of gene sets is not the latest version, so when beginning a new analysis you might want to download the current collection of gene sets from the … orgonlifeWebPackage 'HTSanalyzeR' - Bioconductor . Package 'HTSanalyzeR' - Bioconductor . SHOW MORE orgonit megamocWebgseaScores: Compute enrichment scores for GSEA (Gene Set Enrichment... htmlAttrVectorPaste: Collapse an attribute vector for a table unit HTSanalyzeR: HTSanalyzeR Package Overview HTSanalyzeR4cellHTS2: An analysis pipeline for cellHTS2 objects hyperGeoTest: Performs hypergeometric tests for over-representation... orgonity allegroWebgseaScores: Compute enrichment scores for GSEA (Gene Set Enrichment... htmlAttrVectorPaste: Collapse an attribute vector for a table unit HTSanalyzeR: HTSanalyzeR Package Overview how to use the frame tool in photoshop